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Copy pathmodules.json
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224 lines (224 loc) · 10.5 KB
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{
"name": "nf-core/genomeassembler",
"homePage": "https://github.com/nf-core/genomeassembler",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"busco/busco": {
"branch": "master",
"git_sha": "3927a974459b80b8e24d73e00da029e8c7335c4d",
"installed_by": ["modules"]
},
"bwamem2/index": {
"branch": "master",
"git_sha": "62ce917fd775aaef732eb82019de069c765adfd3",
"installed_by": ["modules"],
"patch": "modules/nf-core/bwamem2/index/bwamem2-index.diff"
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "62ce917fd775aaef732eb82019de069c765adfd3",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "826a9b28d6da61097d60e1923bb8a2e51de3c5b4",
"installed_by": ["modules"]
},
"fastplong": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"flye": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/flye/flye.diff"
},
"genomescope2": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/genomescope2/genomescope2.diff"
},
"gfatools/gfa2fa": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/gfatools/gfa2fa/gfatools-gfa2fa.diff"
},
"gunzip": {
"branch": "master",
"git_sha": "0902eac3012baaf4f9ab6513c8c55acc9353c96c",
"installed_by": ["modules"]
},
"hifiasm": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"htslib/bgziptabix": {
"branch": "master",
"git_sha": "37f69c8ca3eb3d038a5d44f33a329e49f44bd4f2",
"installed_by": ["modules"]
},
"jellyfish/count": {
"branch": "master",
"git_sha": "f783ab0f09a75b5134084aa379280aef197b6dd8",
"installed_by": ["modules"]
},
"liftoff": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/liftoff/liftoff.diff"
},
"links": {
"branch": "master",
"git_sha": "5909fc046b4b2062e4b4173808aacd2424e0866a",
"installed_by": ["modules"],
"patch": "modules/nf-core/links/links.diff"
},
"longstitch": {
"branch": "master",
"git_sha": "63f1a4b78b0655e854c1e7cf2b702bc887a1393f",
"installed_by": ["modules"]
},
"merqury/merqury": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/merqury/merqury/merqury-merqury.diff"
},
"meryl/count": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"meryl/unionsum": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "135d883a43b1a2324b4112cd270cf22e20835533",
"installed_by": ["modules"],
"patch": "modules/nf-core/minimap2/align/minimap2-align.diff"
},
"picard/addorreplacereadgroups": {
"branch": "master",
"git_sha": "fe08122c3dc2f2d7890daba06f6c90e570ef01de",
"installed_by": ["modules"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "fe08122c3dc2f2d7890daba06f6c90e570ef01de",
"installed_by": ["modules"]
},
"pilon": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/pilon/pilon.diff"
},
"quast": {
"branch": "master",
"git_sha": "9a034dd2c5df2c9b283e09ddf2667d9118b4ccd7",
"installed_by": ["modules"],
"patch": "modules/nf-core/quast/quast.diff"
},
"ragtag/patch": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/ragtag/patch/ragtag-patch.diff"
},
"ragtag/scaffold": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"],
"patch": "modules/nf-core/ragtag/scaffold/ragtag-scaffold.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/faidx/samtools-faidx.diff"
},
"samtools/fastq": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["bam_stats_samtools"]
},
"yahs": {
"branch": "master",
"git_sha": "6d46786420b4d7bc88eba026eb389c0c5535d120",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "9339809fcb90af8a8b7051e6cd914894d5c52002",
"installed_by": ["bam_sort_stats_samtools"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "c2b22d85f30a706a3073387f30380704fcae013b",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "a3fb7351b1fdb2b1de282b765816bbea190e86a8",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "a7b27fd25bfa8dcc07d299e88bd790585901a436",
"installed_by": ["subworkflows"]
}
}
}
}
}
}