Issues

• Opaque failure while reading GenBank

  SynBioDex/libSBOLj#623 · Filter by author jakebeal opened on Sep 18, 2021
  1

• Invalid reporting of error sbol-11003

  bug
  SynBioDex/libSBOLj#621 · Filter by author jakebeal opened on Sep 10, 2021
  1

• displayID truncation in LOCUS field of GenBank conversions

  SynBioDex/libSBOLj#620 · Filter by author jakebeal opened on Jul 28, 2021

• A robust Genbank – SBOL converter tool

  SynBioDex/libSBOLj#611 · Filter by author cjmyers opened on Feb 22, 2020

• Error converting GenBank files with spaces in feature types

  bugpriority
  SynBioDex/libSBOLj#607 · Filter by author cjmyers opened on Dec 9, 2019 · SBOL 2.5
  

• Support non-local SBH fetches

  changepriority
  SynBioDex/libSBOLj#606 · Filter by author cjmyers opened on Dec 9, 2019 · SBOL 2.5
  

• GenBank/FASTA converters do not work with multiple ranges

  bugpriority
  SynBioDex/libSBOLj#600 · Filter by author cjmyers opened on Oct 28, 2019 · SBOL 2.5
  

• getImpliedNucleicAcidSequence does not work with multiple ranges

  bugpriority
  SynBioDex/libSBOLj#599 · Filter by author cjmyers opened on Oct 28, 2019 · SBOL 2.5
  

• Update GenBank converter

  changepriority
  SynBioDex/libSBOLj#598 · Filter by author cjmyers opened on Aug 1, 2019 · SBOL 2.5
  

• sbol-10204 does not capture null displayId values

  change
  SynBioDex/libSBOLj#596 · Filter by author jakebeal opened on Jun 18, 2019 · SBOL 2.5
  2

  

• displayId rejection should say which ID is the problem

  change
  SynBioDex/libSBOLj#595 · Filter by author jakebeal opened on Jun 18, 2019 · SBOL 2.5
  2

  

• FASTA parser should generate unique ids

  change
  SynBioDex/libSBOLj#591 · Filter by author cjmyers opened on May 16, 2019 · SBOL 2.5
  3

  

• Check sbol-13506 hasUnit in Measure refers to a Unit

  SynBioDex/libSBOLj#581 · Filter by author cjmyers opened on Mar 30, 2019 · SBOL 2.5

• libSBOLj serializes Boolean annotations as strings

  change
  SynBioDex/libSBOLj#565 · Filter by author jakebeal opened on Mar 4, 2019 · SBOL 2.5
  2

  

• Problem with fix URI prefixes with overlapping prefix names

  bug
  SynBioDex/libSBOLj#561 · Filter by author cjmyers opened on Oct 2, 2018 · SBOL 2.5
  

• Should have method to print in XML format a specified TopLevel

  feature
  SynBioDex/libSBOLj#558 · Filter by author cjmyers opened on Aug 1, 2018 · SBOL 2.5
  

• Should add methods to count objects and print these counts

  feature
  SynBioDex/libSBOLj#557 · Filter by author cjmyers opened on Aug 1, 2018 · SBOL 2.5
  

• Need better provenance construction helper functions

  feature
  SynBioDex/libSBOLj#556 · Filter by author cjmyers opened on Aug 1, 2018 · SBOL 2.5
  

• Add a method to compile a sequence that satisfies the SequenceConstraints

  feature
  SynBioDex/libSBOLj#555 · Filter by author cjmyers opened on Aug 1, 2018 · SBOL 2.5
  

• Inverted recursive copy method

  feature
  SynBioDex/libSBOLj#553 · Filter by author cjmyers opened on Jul 19, 2018 · SBOL 2.5
  

• Parsing of RDF files depends on XML structure

  feature
  SynBioDex/libSBOLj#551 · Filter by author jamesamcl opened on Jun 19, 2018 · SBOL 2.5
  1

• Add a flag to validation to indicate missing parts should be fetched from the web-of-registries

  featurepriority
  SynBioDex/libSBOLj#550 · Filter by author cjmyers opened on Jun 8, 2018 · SBOL 2.5
  

• Validation of sbol that uses persistentIdentity references may not work completely

  change
  SynBioDex/libSBOLj#549 · Filter by author cjmyers opened on Jun 4, 2018 · SBOL 2.5
  

• Support import/conversion from GFF

  featurepriority
  SynBioDex/libSBOLj#547 · Filter by author cjmyers opened on May 16, 2018 · SBOL 2.5
  

• Certificate errors connecting to SynBioHub instances

  documentation
  SynBioDex/libSBOLj#544 · Filter by author jakebeal opened on Feb 14, 2018 · SBOL 2.5
  9