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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    HTML 842 164

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 180 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 372 65

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 201 43

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 721 116

Repositories

Showing 10 of 399 repositories
  • pic-sure Public

    PIC-SURE API

    hms-dbmi/pic-sure's past year of commit activity
    Java 6 Apache-2.0 6 0 11 Updated Oct 30, 2026
  • udi-yac Public

    Monorepo containing front-end/back-end code for the UDI visualization language and YAC chat interface.

    hms-dbmi/udi-yac's past year of commit activity
    Python 4 MIT 2 51 1 Updated Oct 30, 2026
  • tissue-map-tools Public
    hms-dbmi/tissue-map-tools's past year of commit activity
    Python 20 BSD-3-Clause 4 17 6 Updated Oct 30, 2026
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend's past year of commit activity
    TypeScript 1 Apache-2.0 4 1 15 Updated Oct 30, 2026
  • gosling-authoring-revisit-study Public

    reVISit user study on LLM-authored gosling visualizations

    hms-dbmi/gosling-authoring-revisit-study's past year of commit activity
    HTML 0 0 0 0 Updated Oct 30, 2026
  • pic-sure-r-adapter-hpds Public

    Adapter library for PIC-SURE HPDS Resources (in R language)

    hms-dbmi/pic-sure-r-adapter-hpds's past year of commit activity
    R 2 Apache-2.0 3 1 1 Updated Oct 30, 2026
  • pic-sure-python-adapter-hpds Public

    A Python client library for PIC-SURE-HPDS resources

    hms-dbmi/pic-sure-python-adapter-hpds's past year of commit activity
    Python 0 Apache-2.0 2 0 6 Updated Oct 30, 2026
  • Access-to-Data-using-PIC-SURE-API Public
    hms-dbmi/Access-to-Data-using-PIC-SURE-API's past year of commit activity
    Jupyter Notebook 8 Apache-2.0 9 0 0 Updated Oct 30, 2026
  • pic-sure-auth-microapp Public archive
    hms-dbmi/pic-sure-auth-microapp's past year of commit activity
    Java 4 Apache-2.0 5 0 0 Updated Oct 30, 2026
  • cvh Public

    A collaborative platform for creating and sharing interactive genomic, spatial, and single-cell visualizations. Powered by Gosling and Vitessce.

    hms-dbmi/cvh's past year of commit activity
    TypeScript 5 MIT 0 52 3 Updated Oct 29, 2026
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