imzml

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

Tool for converting mass spectrometry data to the imzML format.

A tool for mass spectrometry data analysis.

This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/

Java imzML (mass spectrometry imaging) and mzML (mass spectrometry) parser

R package to convert raman data in .txt format exported from WiRe 5.2(Renishaw) and FIVE 5.1(WiTec) into the imzML data format.

Peak group alignment of mass spectrometry imaging data onto a reference m/z grid