Linux CI

Workflow runs for Linux CI

• Fix query -f '%TGT' and '%IUPACGT' to work with 64 or more ALT al…

  completed successfully:
  Linux CI#105:Commitbc63cf2pushedbypd3
  develop

  Oct 29, 20267m 36s
  More actions for workflow run 105

• Modify test to make it platform independent

  completed successfully:
  Linux CI#104:Commit18600cepushedbypd3
  develop

  Oct 29, 20267m 3s
  More actions for workflow run 104

• Gentoo fixes

  requires action with the application:
  Linux CI#103:Pull request#2614openedbySoapGentoo
  SoapGentoo:gentoo-fixes

  Oct 28, 2026Action required
  More actions for workflow run 103

• Merge version number bump and NEWS file from master

  completed successfully:
  Linux CI#102:Commitb62c1bdpushedbydaviesrob
  develop

  Oct 27, 202624m 16s
  More actions for workflow run 102

• Release 1.25

  completed successfully:
  Linux CI#101:Commit09795ccpushedbydaviesrob
  master

  Oct 27, 202631m 27s
  More actions for workflow run 101

• Release 1.25

  completed successfully:
  Linux CI#100:Commit09795ccpushedbydaviesrob
  1.25

  Oct 27, 202627m 42s
  More actions for workflow run 100

• Release 1.24.1

  completed successfully:
  Linux CI#99:Commit2fd5931pushedbydaviesrob
  1.24.1

  Oct 27, 202626m 40s
  More actions for workflow run 99

• Release 1.24.1

  completed successfully:
  Linux CI#98:Commit2fd5931pushedbydaviesrob
  fixes-1.24

  Oct 27, 202616m 16s
  More actions for workflow run 98

• More informative error message. Resolves #1272

  completed successfully:
  Linux CI#97:Commit4e865b0pushedbypd3
  develop

  Oct 26, 20269m 49s
  More actions for workflow run 97

• Update INSTALL. Resolves #1033

  completed successfully:
  Linux CI#96:Commitc356402pushedbypd3
  develop

  Oct 26, 20269m 57s
  More actions for workflow run 96

• Update INSTALL. Resolves #464

  completed successfully:
  Linux CI#95:Commit257a516pushedbypd3
  develop

  Oct 26, 202610m 48s
  More actions for workflow run 95

• sort: preserve 64-bit values and detect temporary-file I/O errors

  completed successfully:
  Linux CI#94:Pull request#2611synchronizebypd3
  sort-big-coords.bt-2043

  Oct 26, 202615m 5s
  More actions for workflow run 94

• Modify test to make it platform independent

  completed successfully:
  Linux CI#93:Commit2485cc5pushedbypd3
  sort-big-coords.bt-2043

  Oct 26, 20268m 32s
  More actions for workflow run 93

• Fix a segfault occurring when --gvcf is combined with --keep-alts

  completed successfully:
  Linux CI#92:Commit6e96015pushedbypd3
  develop

  Oct 26, 20268m 26s
  More actions for workflow run 92

• norm: set --old-rec-tag and count REF-only trims as realigned

  completed successfully:
  Linux CI#91:Pull request#2612openedbydavmlaw
  davmlaw:norm-ref-only-trim-2391

  Oct 26, 20265m 52s
  More actions for workflow run 91

• Avoid segfault and print an informative message

  completed successfully:
  Linux CI#90:Commit9cbacfepushedbypd3
  develop

  Oct 25, 20268m 14s
  More actions for workflow run 90

• sort: preserve 64-bit values and detect temporary-file I/O errors

  completed successfully:
  Linux CI#89:Pull request#2611openedbypd3
  sort-big-coords.bt-2043

  Oct 25, 20269m 40s
  More actions for workflow run 89

• sort: preserve 64-bit values and detect temporary-file I/O errors

  completed successfully:
  Linux CI#88:Commit14cbbedpushedbypd3
  sort-big-coords.bt-2043

  Oct 25, 20267m 4s
  More actions for workflow run 88

• Fix a serious bug in estimating AF from genotypes when --AF-tag is no…

  completed successfully:
  Linux CI#87:Commit2893977pushedbypd3
  develop

  Oct 24, 20267m 48s
  More actions for workflow run 87

• Fix Makefile dependencies and #include style [minor]

  completed successfully:
  Linux CI#86:Commit63edd7apushedbypd3
  develop

  Oct 22, 202615m 45s
  More actions for workflow run 86

• Fix Makefile dependencies and #include style [minor]

  cancelled:
  Linux CI#85:Commit63edd7apushedbypd3
  develop

  Oct 22, 20268m 44s
  More actions for workflow run 85

• Correct speeling and other minor changes

  completed successfully:
  Linux CI#84:Pull request#2610openedbyjmarshall
  jmarshall:speeling

  Oct 22, 20266m 43s
  More actions for workflow run 84

• Fix negated regular-expression (!~) filtering of string fields

  completed successfully:
  Linux CI#83:Commit241dd10pushedbypd3
  develop

  Oct 21, 20268m 11s
  More actions for workflow run 83

• Fix incorrect allele mappings when atomizing multiallelic records

  completed successfully:
  Linux CI#82:Commita8502a6pushedbypd3
  develop

  Oct 21, 20268m 31s
  More actions for workflow run 82

• Extend --check-ref for explicit control of output case, fix allele ma…

  completed successfully:
  Linux CI#81:Commit385820fpushedbypd3
  develop

  Oct 21, 20268m 3s
  More actions for workflow run 81